species:   Scscl
pid:       PID1757
parent:    Ssc-milR-233
paralog:   
locus:     NW_001820831.1:1140846-1140896
matures:   ['UGGAGCGGCGGAAGUUUGUUGA', 'GGCAGAGGUCUCUUGUGGCUGAG']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820831.1:1140846-1140896

3 out of bounds
4 alignments
3 proper strand
3 stranded perfect matches

      **************************************       
UGGAGCGGCGGAAGUUUGUUGAUGGUCGGCAGAGGUCUCUUGUGGCUGAGC
...(((.(((((..((((((((...))))))))..)))...)).)))....
UGGAGCGGCGGAAGUUUGUUGA----------------------------- l=22 a=0 c
---------------------------GGCAGAGGUCUCUUGUGGCUGAG- l=23 a=0 c*
-------------------------UCGGCAGAGGUCUCUUGUG------- l=19 a=1 ma
--------CGGAAGUUUGUUGAUG--------------------------- l=16 a=0 ma*

-------------------------UCGGCAGAGGUCUCUUGUG------- l=19 a=1 (ma)
----------------UGUUGAUGGUCGGCAGAG----------------- l=18 a=1 
UGGAGCGGCGGAAGUUUGUU------------------------------- l=20 a=1 

mb-01111
ax-1001001
ku-01
ss-100010101100
fn-001
